PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00042g05014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 227aa    MW: 26043.1 Da    PI: 4.9104
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00042g05014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-2176136257
                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               r+R+t+t+ ql++Le++F + n +ps++++++++ +l    +++e++V++WFqNrRa+ k+
  Peinf101Scf00042g05014.1  76 RQRWTPTPVQLQILERMFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 136
                               89*****************99**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-1374141IPR001356Homeobox domain
SuperFamilySSF466891.92E-1875140IPR009057Homeodomain-like
CDDcd000868.58E-1376138No hitNo description
PfamPF000465.4E-1976136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1676140IPR009057Homeodomain-like
PROSITE profilePS5007114.30176137IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEWDEQLQQQ QPPQTVEDMN GTGGGGMFVK VMTDEQMEVL RKQIAVYAVI CEKLVDLHKS  60
VASQHDLAAG HRICGRQRWT PTPVQLQILE RMFDQGNGTP SKQKIKDITF ELSQHGQISE  120
TNVYNWFQNR RARSKRKQQV MGNNVVESEV ETEVESPNEK KTKPEDLQYS DILTSKAEEG  180
SSRPAENFDQ LSFYAMSNPR MDQLIEKMED AASYHPYLHA ENFDMTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARSKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597868.11e-121PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
RefseqXP_016457345.11e-121PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
SwissprotQ5QMM35e-70WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLM0ZMN11e-114M0ZMN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000039801e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.15e-63WUSCHEL related homeobox 13