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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00042g05014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | WOX | ||||||||
Protein Properties | Length: 227aa MW: 26043.1 Da PI: 4.9104 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.5e-21 | 76 | 136 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Peinf101Scf00042g05014.1 76 RQRWTPTPVQLQILERMFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 136 89*****************99**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.7E-13 | 74 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-18 | 75 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.58E-13 | 76 | 138 | No hit | No description |
Pfam | PF00046 | 5.4E-19 | 76 | 136 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 76 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.301 | 76 | 137 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEWDEQLQQQ QPPQTVEDMN GTGGGGMFVK VMTDEQMEVL RKQIAVYAVI CEKLVDLHKS 60 VASQHDLAAG HRICGRQRWT PTPVQLQILE RMFDQGNGTP SKQKIKDITF ELSQHGQISE 120 TNVYNWFQNR RARSKRKQQV MGNNVVESEV ETEVESPNEK KTKPEDLQYS DILTSKAEEG 180 SSRPAENFDQ LSFYAMSNPR MDQLIEKMED AASYHPYLHA ENFDMTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 137 | RRARSKRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597868.1 | 1e-121 | PREDICTED: WUSCHEL-related homeobox 13-like isoform X1 | ||||
Refseq | XP_016457345.1 | 1e-121 | PREDICTED: WUSCHEL-related homeobox 13-like isoform X1 | ||||
Swissprot | Q5QMM3 | 5e-70 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | M0ZMN1 | 1e-114 | M0ZMN1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003980 | 1e-113 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5675 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 5e-63 | WUSCHEL related homeobox 13 |